Bioimage Data Analysis Workflows - Advanced Components and Methods

This open-access textbook provides detailed explanations on designing and constructing image analysis workflows for bioimage analysis, addressing challenges such as large data volumes and downstream data processing techniques. It guides readers through analyzing image data to reveal parameters driving biological systems, with examples including segmentation of plant tissue, eye development, and collective cell migration. The textbook is intended for advanced students, staff scientists, and faculty members in life sciences and biomedicine.

Format: Paperback / softback
Length: 212 pages
Publication date: 30 September 2022
Publisher: Springer Nature Switzerland AG

This comprehensive open-access textbook serves as a valuable resource for designing and constructing effective image analysis workflows in the field of bioimage analysis. It adeptly addresses the primary challenges encountered in analyzing large volumes of image data generated by advanced imaging devices. The book delves into techniques that leverage batch and GPU programming, as well as powerful deep learning-based algorithms, to efficiently handle such data. Furthermore, downstream data processing techniques, such as Python libraries for data organization, plotting, and visualizations, are introduced to facilitate comprehensive analysis. By studying the implementation of individual unique ideas within the workflows, readers are guided through the process of uncovering the parameters driving biological systems through the analysis of image data.

These studies encompass a range of applications, including segmentation of plant tissue epidermis, analysis of the spatial pattern of eye development in fruit flies, and the study of collective cell migration dynamics. The presented content expands upon the content of the textbook "Bioimage Data Analysis Workflows" (Miura, Sladoje, 2020), published in this same series, with new contributions and advanced material. While maintaining the pedagogical approach adopted and fostered during the bioimage analysis training schools organized within NEUBIAS – the Network of European Bioimage Analysts, this textbook caters to advanced students in various life sciences and biomedicine fields, as well as staff scientists and faculty members who engage in regular quantitative analyses of microscopy images.

Weight: 387g
Dimension: 240 x 168 (mm)
ISBN-13: 9783030763930
Edition number: 1st ed. 2022