Algorithms and Methods in Structural Bioinformatics

The three-dimensional structure and function of molecules present challenges and opportunities for developing an understanding of biological systems. Algorithmic advancement is needed to address protein-protein interactions, mutations, and protein structure determination. This book focuses on topics such as cryo-EM structural detection, protein conformational exploration, molecular binding surface, and the effect of mutations, insertions, and deletions on protein structural stability.

Format: Hardback
Length: 114 pages
Publication date: 02 September 2022
Publisher: Springer International Publishing AG

The intricate three-dimensional structure and function of molecules present a multitude of challenges and opportunities for advancing our understanding of biological systems. As the availability of molecular structures and the precision of structure predictions and molecular simulations continue to increase, the potential for algorithmic advancements on a wide range of analytical and predictive problems is vast and profound. To facilitate this field, a diverse array of methods and algorithms are readily accessible, addressing critical issues such as protein-protein interactions, the impact of mutations on protein structure and function, and the determination of protein structures. Despite recent breakthroughs, particularly in protein folding with the development of AlphaFold, many challenges remain unsolved.

In this book, we delve into various topics within Structural Bioinformatics, including:

Cryo-EM structural detection: This technique utilizes electron microscopy to obtain high-resolution images of biological structures, providing valuable insights into their atomic configurations.

Protein conformational exploration: By employing computational methods, we can study the dynamic behavior and conformational changes of proteins, shedding light on their functions and interactions.

Elucidation of molecular binding surfaces using geometry: By analyzing the spatial arrangement of atoms and chemical bonds, we can identify key regions on proteins that interact with other molecules, aiding in the understanding of molecular recognition and binding processes.

The effect of mutations, insertions, and deletions on protein structural stability: Understanding how genetic variations affect protein structure is crucial for predicting disease-related effects and developing therapeutic strategies.

Protein-ligand binding: By studying the interactions between proteins and small molecules, we can gain insights into drug discovery, drug-target interactions, and the development of therapeutic agents.

These topics are of paramount importance in advancing our understanding of biological systems and have significant implications for various fields, including medicine, biotechnology, and pharmaceutical research. By utilizing structural bioinformatics approaches, we can unravel the complex mechanisms underlying biological processes and develop innovative solutions to address pressing healthcare challenges.

Weight: 360g
Dimension: 235 x 155 (mm)
ISBN-13: 9783031059131
Edition number: 1st ed. 2022